When used, it will retain a bit of dirty water inside the filter, when you put it back into your pocket / pack / water 'kit' this water will drain out and contaminate your 'clean' water apparatus.
Solution :
Take a 500ml (or whatever) sized disposable supermarket water bottle, one with the thread that screws into the end of the Sawyer. Cut off the neck of the bottle and glue the screw cap onto the cut off end.
You can now screw the 'screw end' of the cut off into the sawyer and you have blanked off the 'dirty-end' and no cross-contamination can occur.
I would post a picture of mine, but for some reason when I click on 'add attachment' I no longer have the option to post pictures.